Time Zone – GMT-4 (America/New_York)
| Pl | W | D | L | Diff | Pts | |||
| 1 | Mito | 21 | 12 | 6 | 3 | 31:17 | 14 | 42 |
| 2 | Vegalta Sendai | 21 | 11 | 7 | 3 | 27:19 | 8 | 40 |
| 3 | Chiba | 21 | 11 | 5 | 5 | 32:19 | 13 | 38 |
| 4 | Omiya Ardija | 21 | 10 | 8 | 3 | 31:18 | 13 | 38 |
| 5 | Tokushima | 21 | 10 | 7 | 4 | 23:11 | 12 | 37 |
| 6 | Iwata | 21 | 10 | 5 | 6 | 31:25 | 6 | 35 |
| 7 | V-Varen Nagasaki | 21 | 9 | 7 | 5 | 37:34 | 3 | 34 |
| 8 | Sagan Tosu | 21 | 9 | 6 | 6 | 21:20 | 1 | 33 |
| 9 | Imabari | 21 | 6 | 10 | 5 | 24:19 | 5 | 28 |
| 10 | Hokkaido Consadole Sapporo | 21 | 8 | 4 | 9 | 28:34 | -6 | 28 |
| 11 | Oita Trinita | 21 | 6 | 9 | 6 | 19:20 | -1 | 27 |
| 12 | Kofu | 21 | 6 | 8 | 7 | 18:18 | 0 | 26 |
| 13 | Fujieda MYFC | 21 | 6 | 5 | 10 | 23:29 | -6 | 23 |
| 14 | Iwaki | 21 | 5 | 7 | 9 | 25:30 | -5 | 22 |
| 15 | Blaublitz | 21 | 6 | 3 | 12 | 25:38 | -13 | 21 |
| 16 | Montedio Yamagata | 21 | 5 | 5 | 11 | 28:33 | -5 | 20 |
| 17 | Toyama | 21 | 4 | 7 | 10 | 18:24 | -6 | 19 |
| 18 | Renofa Yamaguchi | 21 | 3 | 9 | 9 | 19:27 | -8 | 18 |
| 19 | Kumamoto | 21 | 4 | 6 | 11 | 22:33 | -11 | 18 |
| 20 | Ehime | 21 | 2 | 10 | 9 | 22:36 | -14 | 16 |
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